cellgeni/rnaseq Docker Image
CGI RNAseq是由Wellcome Sanger研究所Cellular Genetics项目开发的生物信息学分析管道，使用Nextflow处理RNA测序数据，包括FastQ预处理、读数比对及质量控制，适用于LSF集群和OpenStack私有云等系统。
RNAseq pipeline
Introduction
RNAseq is a bioinformatics analysis pipeline used for RNA sequencing data at the http://www.sanger.ac.uk/science/programmes/cellular-genetics at http://www.sanger.ac.uk/, Sweden.
The pipeline uses [***] a bioinformatics workflow tool. It pre-processes raw data from FastQ inputs, aligns the reads and performs extensive quality-control on the results.
This pipeline is primarily used with an LSF cluster and an OpenStack private cloud. However, the pipeline should be able to run on any system that Nextflow supports. See the installation docs for more information.
Documentation
The RNAseq pipeline comes with documentation about the pipeline, found in the docs/ directory.
Credits
The original pipeline was developed at the National Genomics Infrastructure at SciLifeLab in Stockholm, Sweden by Phil Ewels (https://github.com/ewels) and Rickard Hammarén (https://github.com/Hammarn).
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