combiz/singlecell-docker
combiz
Docker image for single cell analysis with R
下载次数: 0状态：社区镜像维护者：combiz仓库类型：镜像最近更新：6 年前
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请先完整阅读并严格遵守以下文档中的全部规则与要求：
https://xuanyuan.cloud/agents.md
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A docker image with a range of R packages installed for singlecell analysis: -
CRAN : abind, acepack, ADGofTest, alabama, apcluster, ape, aplpack, argparse, ashr, askpass, assertthat, backports, base64enc, bbmle, beeswarm, BH, bibtex, BiocManager, bit, bit64, bitops, blme, blob, bookdown, boot, brew, broom, brotli, Cairo, callr, caret, caTools, CDVine, cellranger, checkmate, chron, class, classInt, clipr, clisymbols, cluster, coda, CodeDepends, codetools, colorspace, combinat, commonmark, copula, covr, cowplot, crayon, crop, crosstalk, curl, cyclocomp, data.table, DBI, dbplyr, deldir, densityClust, desc, devtools, dichromat, digest, DistributionUtils, docopt, doParallel, doRNG, doSNOW, dotCall64, dplyr, dqrng, DrImpute, DT, dynamicTreeCut, e1071, egg, ellipsis, emdbook, english, etrunct, eulerr, evaluate, evd, expm, extrafont, extrafontdb, fansi, fastICA, fastmap, fields, fiery, findpython, fitdistrplus, flextable, FNN, forcats, foreach, foreign, formatR, formattable, Formula, fs, furrr, futile.logger, futile.options, future, future.apply, gameofthrones, gbRd, gdata, gdtools, GeneralizedHyperbolic, generics, GenSA, ggbeeswarm, ggdendro, ggplot2, ggpubr, ggrepel, ggridges, ggsci, ggsignif, ggthemes, gh, git2r, glmnet, globals, glue, gmodels, gower, gplots, gridExtra, grr, gsl, gtable, gtools, harrypotter, haven, hdf5r, hexbin, HGNChelper, highlight, highr, Hmisc, hms, htmlTable, htmltools, htmlwidgets, httpuv, httr, hunspell, ica, ids, igraph, ini, insight, ipred, irlba, iterators, jcolors, jsonlite, kdecopula, kernlab, KernSmooth, knitr, ks, labeling, lambda.r, later, lattice, latticeExtra, lava, lazyeval, lcopula, LearnBayes, leiden, lifecycle, lintr, listenv, lme4, lmtest, locfit, lpSolveAPI, lsei, lubridate, magrittr, manipulateWidget, mapproj, maps, markdown, MASS, Matrix, Matrix.utils, matrixStats, mclust, memoise, metap, mev, mgcv, mime, miniUI, minqa, mixsqp, ModelMetrics, modelr, modes, moonBook, multicool, munsell, mvbutils, mvnormtest, mvtnorm, network, nleqslv, nlme, nloptr, nnet, nortest, npsurv, numDeriv, officer, oompaBase, openssl, packrat, paletteer, palr, pals, pbapply, pbmcapply, pcaPP, pheatmap, pillar, pkgbuild, pkgconfig, pkgdown, pkgload, pkgmaker, plogr, plotly, plyr, png, polyclip, polylabelr, polynom, praise, prettydoc, prettyunits, processx, prodlim, progress, promises, proxy, pryr, ps, pscl, pso, pspline, purrr, qlcMatrix, qrng, quadprog, quantmod, R.methodsS3, R.oo, R.utils, R6, randtoolbox, RANN, rcmdcheck, RColorBrewer, Rcpp, RcppAnnoy, RcppArmadillo, RcppEigen, RcppHNSW, RcppNumerical, RcppParallel, RcppProgress, RcppRoll, RCurl, Rdpack, readr, readxl, recipes, registry, rematch, rematch2, remotes, reprex, reqres, reshape2, reticulate, rex, rgl, RhpcBLASctl, rjson, rlang, Rmagic, rmarkdown, rngtools, rngWELL, ROCR, ROI, routr, roxygen2, rpart, rprojroot, rsample, rsconnect, Rsolnp, RSpectra, RSQLite, rstudioapi, rsvd, Rtsne, Rttf2pt1, rugarch, RUnit, Runuran, rversions, rvest, scales, scatterplot3d, scico, sctransform, SDMTools, selectr, servr, sessioninfo, sf, sfsmisc, shiny, sitmo, sjlabelled, sjmisc, SkewHyperbolic, slam, snow, softImpute, sourcetools, sp, spam, sparsesvd, spatial, spd, spData, spdep, speedglm, spelling, SQUAREM, stabledist, statmod, stringdist, stringi, stringr, styler, survival, svMisc, sys, systemfonts, testit, testthat, threejs, tibble, tidyr, tidyselect, tidyverse, timeDate, tinytex, triebeard, TruncatedNormal, truncnorm, tseries, tsne, TSP, TTR, tufte, units, urltools, usethis, utf8, uuid, uwot, vctrs, VGAM, VineCopula, vipor, viridis, viridisLite, vroom, WebGestaltR, webshot, webutils, whisker, withr, xfun, XML, xml2, xmlparsedata, xopen, xtable, xts, yaml, zeallot, zip, zoo, ztable
Bioconductor: annotate, AnnotationDbi, apeglm, batchelor, beachmat, Biobase, BiocGenerics, BiocInstaller, BiocNeighbors, BiocParallel, BiocSingular, BiocStyle, BiocVersion, biocViews, biomaRt, Biostrings, DelayedArray, DelayedMatrixStats, DESeq2, edgeR, genefilter, geneplotter, GenomeInfoDb, GenomeInfoDbData, GenomicAlignments, GenomicRanges, graph, HDF5Array, HSMMSingleCell, IRanges, limma, LoomExperiment, MAST, RBGL, Rgraphviz, rhdf5, Rhdf5lib, Rhtslib, Rsamtools, rtracklayer, S4Vectors, scater, scran, scRNAseq, SingleCellExperiment, SummarizedExperiment, tximport, XVector, zinbwave, zlibbioc
Github: r-lib/cli, cole-trapnell-lab/DDRTree, chris-mcginnis-ucsf/DoubletFinder, wjawaid/enrichR, nathanskene/ewce, VPetukhov/ggrastr, cole-trapnell-lab/L1-graph, cole-trapnell-lab/leidenbase, ThinkR-open/littleboxes, mojaveazure/loomR, cole-trapnell-lab/monocle3, satijalab/seurat, satijalab/seurat-data, lorenzwalthert/strcode, ChenMengjie/VIPER
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oldzhang
运维工程师
Linux服务器
5
"Docker访问体验非常流畅，大镜像也能快速完成下载。"