fjboehm/hotspots

hotspots

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The goal of hotspots is to analyze the Keller et al. (2018) expression trait hotspots.

Installation

Install from Dockerhub with this command:

bash
docker pull fjboehm/hotspots

Alternatively, if you wish to install the package directly from Github, use devtools.

r
install.packages("devtools")
devtools::install_github("fboehm/hotspots")

Keller, et al. (2018)’s hotspots table

Here is Keller’s Table S1 (from the Supplemental Documents).

From Keller et al. 2018 GENETICS, Supplementary table 1

Example

This is a basic example which shows you how to solve a common problem:

r
#library(hotspots)
## basic example code

Build the manuscript paper.Rnw

To render the manuscript paper.Rnw, into pdf, use a shell to enter the following text from the ‘hotspots’ directory:

bash
docker build .

If you’re not using Docker, and have cloned the repository from Github, you can use the Makefile to render paper.Rnw. Just type make in the shell (from within the hotspots directory):

bash
make

Code of Conduct

Please note that the ‘hotspots’ project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.