jammont/isofit Docker 镜像 - 轩辕镜像 | Docker 镜像高效稳定拉取服务

Docker

These are the official container images for the ISOFIT package. They come pre-configured with everything a user may need to get started using ISOFIT and executing its examples.

Tags

• latest - Most recent released ISOFIT version
• 3.x.x - Specific release builds
• slim - Code-only variant, see notes below

Getting Started

Start by pulling the image:

$ docker pull jammont/isofit:latest

This image is default tagged as jammont/isofit. As such, to use it run:

$ docker run -it --rm --shm-size=16gb jammont/isofit bash

After running the above command, you will placed inside the container as the root user. From here you may proceed to use ISOFIT as you need.

You may need to attach volumes to the container at runtime in order to access files external to the container. For instance:

$ docker run --rm -it -v /host/path:/container/path jammont/isofit bash

This will provide /host/path available inside of the container as /container/path. As such, any changes made inside the container to this path or its contents will be reflected on the host.

Additional examples for executing ISOFIT interactively:

# Print version
$ docker run --rm -it jammont/isofit isofit --version

# Execute an example
$ docker run --rm -it --shm-size=16gb jammont/isofit bash examples/20151026_SantaMonica/run.sh
$ docker run --rm -it --shm-size=16gb jammont/isofit bash examples/image_cube/small/analytical.sh

Jupyter

The default run command for the container is to start up a Jupyterlab server on internal port 8888. To connect to this port and make it accessible via the browser, pass the -p [host]:8888 parameter:

$ docker run --rm --shm-size=16gb -p 8888:8888 jammont/isofit

This will start up the Jupyterlab server on port 8888. Navigate to 127.0.0.1:8888 in a web browser to start using the server.

To shutdown, hit CTRL-C in the running terminal.

Slim

The slim tagged dockers contain only the ISOFIT code and required packages to execute it. The extra ISOFIT dependencies such as isofit-data, isofit-tutorials, SixS, sRTMnet, and others, are not included in this image in order to reduce the total footprint. This image is designed specifically for advanced users to manage the additional dependencies externally and then mount them via --volume. Furthermore, the isofit.ini is not initialized as well, so when mounting it is important to either use the default location and names (eg. -v isofit-data:/root/.isofit/data) or manually change the ini within the container. See data for more information on how to manage the ini.