kristiyanto/guidock
kristiyanto
自动构建
Delivering GUI Display from Docker. Contains: R, Cytoscape, Bioconductor, NetworkBMA, RServe.
1 次收藏下载次数: 0状态：自动构建维护者：kristiyanto仓库类型：镜像最近更新：9 年前
让 AI 帮你使用轩辕镜像？ · 展开查看说明 · 点击收起说明
如果你使用 DeepSeek、元宝 AI、Copilot、ChatGPT 等 AI 工具，协助配置轩辕镜像、编写 docker pull 命令、修改 Docker Compose 镜像地址、配置镜像加速、排查镜像拉取失败、分析报错日志等问题，请先让 AI 阅读并遵守轩辕镜像的规则文档。
只需在 AI 对话中先发送下面这句话即可：
请先完整阅读并严格遵守以下文档中的全部规则与要求：
https://xuanyuan.cloud/agents.md
在未充分阅读并理解该文档前，不要生成任何命令、配置、修改建议、故障排查方案或技术回答。后续所有输出都必须严格以该文档中的规范为最高优先级执行。查看 agents.md 用法指南与完整示范。国内用户首推 元宝 AI、DeepSeek 的深度思考模式，不推荐豆包 AI；Cursor 等编辑器可在对话 @ 该链接，或加入 User Rules。 若 AI 无法访问外链，可 打开说明文档 复制全文粘贴。文档会随站点更新，复制内容可能过期，建议定期检查。
https://images.microbadger.com/badges/image/kristiyanto/guidock.svg](http://microbadger.com/images/kristiyanto/guidock "Get your own image badge on microbadger.com") https://images.microbadger.com/badges/version/kristiyanto/guidock.svg](http://microbadger.com/images/kristiyanto/guidock "Get your own version badge on microbadger.com")
!https://raw.githubusercontent.com/kristiyanto/GUIdock/master/logo.png
GUIdock: Using Docker containers with a common graphics user interface to address the reproducibility of research
GUIdock is a Docker Package containing the entire computational environment to run applications with a graphical user interface. As a proof of concept, we focus on supporting Cytoscape, a Java-based standalone program with a graphical user interface for the visualization and analyses of gene networks in biology. In addition to Cytoscape, our container includes R, Rserve, Bioconductor packages igraph, networkBMA and a Cytoscape app called CyNetworkBMA. GUIdock contains the entire pipeline and all the tools (including Cytoscape that connects to preloaded RServe, a Bioconductor package called “networkBMA” and all its dependencies) to generate gene regulatory networks.
Docker file for biodepot/GUIdock (https://hub.docker.com/r/biodepot/guidock/)
Source code, installation and running script, and Dockerfile available at: https://github.com/BioDepot/GUIdock
The package contains: Cytoscape, R, with Bioconductor packages (igraph, Rserve, and networkBMA).
Demonstration video (for Linux, Mac, and Windows)
https://raw.githubusercontent.com/kristiyanto/GUIdock/master/demo.png]([***]
Publication
Hung, Ling-Hong, Daniel Kristiyanto, Sung Bong Lee, and Ka Yee Yeung. "GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research." http://dx.doi.org/10.1371/journal.pone.0152686
http://dx.doi.org/10.1371/journal.pone.0152686
Linux
Install and Run
Download and run runGUIdockLinux.sh from installation folder.
Usage:
sh runGUIdockLinux.sh
The script creates folder ~/.guidock/GUIdock-SHARED within user's home directory. The folder is linked to /root/GUIdock-SHARED in the container.
Instructional Video: [***]
OSX
Install
Docker Toolbox needs to be downloaded and installed manually from the website. https://www.docker.com/toolbox
In addition to Docker Toolbox, GUIdock requires Socat and XQuartz.
Download and run install-mac.sh from Installation folder.
Usage:
sh install-mac.sh
Run GUIdock
To Run GUIdock, download and run start-mac.sh from Installation folder.
Usage:
sh start-mac.sh
Instructional Video: [***]
WINDOWS
Install
Download and install Docker Toolbox from: https://www.docker.com/toolbox
Download and install MobaXterm from: [***]
Run GUIdock
Download RunGUIdock.sh and startMoba.bat from Installation folder.
Execute RunGUIdock.sh by double-click or by running from Windows Powershell:
sh RunGUIdock.sh
Instructional Video: [***]
Contact
Ling-Hong Hung, Daniel Kristiyanto, Sung Bong Lee, Ka Yee Yeung
Institute of Technology
University of Washington
Tacoma, WA 98402, USA
镜像拉取方式
您可以使用以下命令拉取该镜像。请将 <标签> 替换为具体的标签版本。如需查看所有可用标签版本，请访问 标签列表页面。
轩辕镜像加速拉取命令点我查看更多 guidock 镜像标签
docker pull docker.xuanyuan.run/kristiyanto/guidock:<标签>
DockerHub 原生拉取命令
docker pull kristiyanto/guidock:<标签>
镜像拉取常见问题
功能
错误码
用户好评
来自真实用户的反馈，见证轩辕镜像的优质服务
oldzhang
运维工程师
Linux服务器
5
"Docker访问体验非常流畅，大镜像也能快速完成下载。"