stefancrain/folding-at-home

在Docker中运行Folding@Home（支持GPU）

!https://github.com/stefancrain/folding-at-home/workflows/folding-at-home/badge.svg !https://github.com/stefancrain/folding-at-home/workflows/folding-at-home/badge.svg?event=schedule

!https://badgen.net/github/tag/stefancrain/folding-at-home?icon=github&label=version !https://badgen.net/github/last-commit/stefancrain/folding-at-home?icon=github&label=updated !https://badgen.net/docker/pulls/stefancrain/folding-at-home?icon=docker&label=pulls !https://badgen.net/docker/size/stefancrain/folding-at-home/latest/amd64?icon=docker&label=latest !https://badgen.net/docker/stars/stefancrain/folding-at-home?icon=docker

对抗COVID-19及其他疾病

简要说明：Folding@Home通过模拟COVID-19蛋白质动态，寻找新的治疗机会。本容器分发相关程序，希望增加安装量以助力科研。

FAH相关链接

• [[FAQ] SARS-CoV-2 (COVID-19)项目与FAH]([***]
• https://foldingathome.org/2020/03/15/coronavirus-what-were-doing-and-how-you-can-help-in-simple-terms/
• 科学家努力提供更多工作单元的实时画面

非官方，不提供官方支持

我并非F@H团队成员。我会积极处理此处的问题，并已设置https://github.com/stefancrain/folding-at-home/.github/workflows/schedule.yml%E6%9C%BA%E5%88%B6%E4%BB%A5%E5%BA%94%E5%AF%B9%E6%88%91%E4%B8%8D%E5%9C%A8%E6%97%B6%E7%9A%84%E6%9B%B4%E6%96%B0%E3%80%82%E6%AD%A4%E9%95%9C%E5%83%8F%E5%8F%91%E5%B8%83%E4%BA%8Ehttps://hub.docker.com/repository/docker/stefancrain/folding-at-home%EF%BC%8C%E4%BC%9A%E9%9A%8F%E7%9D%80Folding@Home%E5%9B%A2%E9%98%9F%E5%8F%91%E5%B8%83%E6%9B%B4%E6%96%B0%E8%80%8C%E8%87%AA%E5%8A%A8%E6%9B%B4%E6%96%B0%E3%80%82%E6%BA%90%E4%BB%A3%E7%A0%81%E6%89%98%E7%AE%A1%E5%9C%A8GitHub%EF%BC%9Ahttps://github.com/stefancrain/folding-at-home

支持的架构

• CPU：amd64
• GPU：Nvidia 和 AMD
  • https://apps.foldingathome.org/GPUs.txt
  • https://github.com/NVIDIA/nvidia-docker - 我的无头Ubuntu 18.04设置的https://gist.github.com/stefancrain/0b4fe2ae29a***a5d7040a9f7cdb5c
  • 待办：添加AMD的gist

部署方法

CLI docker run

bash
docker run \
  --gpus all \
  -p 7396:7396 \
  docker.xuanyuan.run/stefancrain/folding-at-home:latest \
  --user=您的名称 \
  --team=229500 \
  --power=full \
  --gpu-usage=100 \
  --cpu-usage=100

Docker Compose

Docker Compose的GPU访问目前受compose上游问题https://github.com/docker/compose/issues/6691%E9%98%BB%E7%A2%8D%EF%BC%8C%E7%9B%B8%E5%85%B3%E8%B7%9F%E8%B8%AA%E8%A7%81https://github.com/stefancrain/folding-at-home/issues/4%E3%80%82**%E8%BF%99%E4%BB%85%E6%94%AF%E6%8C%81CPU%E6%8A%98%E5%8F%A0**%EF%BC%9A

bash
---
version: "3"
services:
  folding-at-home:
    image: docker.xuanyuan.run/stefancrain/folding-at-home:latest
    container_name: folding-at-home
    ports:
      - 7396:7396
    restart: unless-stopped
    command: ["--user=您的名称","--team=229500","--power=full","--gpu=false","--cpu-usage=100"]

Kubernetes (K8s)

我家里目前没有K8s集群，因此包含用户在其配置中运行此镜像的示例。

• https://github.com/onedr0p/k3s-gitops/blob/master/deployments/default/folding-at-home/folding-at-home.yaml 运行良好，但/u/onedrop没有经过批准的GPU进行测试
• https://github.com/coreweave/fah-docker/blob/master/kubernetes/folding-at-home-deployment.yaml%EF%BC%88%E5%8F%A6%E4%B8%80%E4%B8%AA%E4%B8%8D%E5%90%8C%E7%9A%84%E5%AE%B9%E5%99%A8%EF%BC%89%E4%BD%86%E6%94%AF%E6%8C%81GPU%E5%90%AF%E7%94%A8%E7%9A%84docker%E5%AE%B9%E5%99%A8%E7%9A%84%E9%85%8D%E7%BD%AE%EF%BC%8C%E6%9C%AA%E6%B5%8B%E8%AF%95%EF%BC%88%E7%94%B1%E6%88%91%EF%BC%89

待办：创建K8s集群并测试！

故障排除和常见问题（FAQ）

Nvidia

Docker能否识别所有GPU？

bash
docker run \
 --rm \
 --gpus all \
 --entrypoint="nvidia-smi" \
 docker.xuanyuan.run/stefancrain/folding-at-home:latest

FAHClient

此容器的FAHClient默认设置是什么？

• 用户：Anonymous
• 团队：https://stats.foldingathome.org/team/229500
• 电源模式：full（使用全部CPU）
• GPU使用率：100%
• CPU使用率：100%
• web-allow/allow：允许端口7396的网络流量
• smp：https://foldingathome.org/2008/06/15/what-does-the-smp-core-do/

如何查看FAHClient配置？

bash
docker run \
 --rm \
 --gpus all \
 --entrypoint="/usr/bin/FAHClient" \
 docker.xuanyuan.run/stefancrain/folding-at-home:latest \
 --info

如何查看其他配置选项？

bash
docker run \
 --rm \
 --entrypoint="/usr/bin/FAHClient" \
 docker.xuanyuan.run/stefancrain/folding-at-home:latest \
 --help

如何查看进度？

默认情况下，容器在本地网络的127.0.0.1:7396开放访问，可通过该地址查看进度。